Benjamin J. Blencowe: search on Z-Library

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1

Dynamic Integration of Splicing within Gene Regulatory Pathways

Braunschweig, Ulrich, Gueroussov, Serge, Plocik, Alex M., Graveley, Brenton R., Blencowe, Benjamin J.

Journal:

Year:

2013

Language:

english

File:

PDF, 1.44 MB

english, 2013

2

Consent insufficient for data release—Response

Sills, Jennifer, Amann, Rudolf I., Baichoo, Shakuntala, Blencowe, Benjamin J., Bork, Peer, Borodovsky, Mark, Brooksbank, Cath, Chain, Patrick S. G., Colwell, Rita R., Daffonchio, Daniele G., Danchin,

Journal:

Year:

2019

Language:

english

File:

PDF, 1.40 MB

english, 2019

3

Transcriptomic analysis of autistic brain reveals convergent molecular pathology

Voineagu, Irina, Wang, Xinchen, Johnston, Patrick, Lowe, Jennifer K., Tian, Yuan, Horvath, Steve, Mill, Jonathan, Cantor, Rita M., Blencowe, Benjamin J., Geschwind, Daniel H.

Journal:

Year:

2011

Language:

english

File:

PDF, 1.25 MB

english, 2011

4

Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing

Pan, Qun, Shai, Ofer, Lee, Leo J, Frey, Brendan J, Blencowe, Benjamin J

Journal:

Nature Genetics

Year:

2008

Language:

english

File:

PDF, 256 KB

english, 2008

5

Exonic splicing enhancers: mechanism of action, diversity and role in human genetic diseases

Benjamin J Blencowe

Journal:

Trends in Biochemical Sciences

Year:

2000

Language:

english

File:

PDF, 300 KB

english, 2000

6

Considerations in the identification of functional RNA structural elements in genomic alignments

Tomas Babak, Benjamin J Blencowe, Timothy R Hughes

Journal:

BMC Bioinformatics

Year:

2007

Language:

english

File:

PDF, 1.78 MB

english, 2007

7

Revealing Global Regulatory Features of Mammalian Alternative Splicing Using a Quantitative Microarray Platform

Qun Pan, Ofer Shai, Christine Misquitta, Wen Zhang, Arneet L. Saltzman, Naveed Mohammad, Tomas Babak, Henry Siu, Timothy R. Hughes, Quaid D. Morris, Brendan J. Frey, Benjamin J. Blencowe

Journal:

Year:

2004

Language:

english

File:

PDF, 643 KB

english, 2004

8

Regulatory Expansion in Mammals of Multivalent hnRNP Assemblies that Globally Control Alternative Splicing

Gueroussov, Serge, Weatheritt, Robert J., O’Hanlon, Dave, Lin, Zhen-Yuan, Narula, Ashrut, Gingras, Anne-Claude, Blencowe, Benjamin J.

Journal:

Year:

2017

Language:

english

File:

PDF, 5.30 MB

english, 2017

9

Protocol for the systematic review of the reporting of transoral robotic surgery

Main, Barry G, Blencowe, Natalie S, Howes, Noah, Cousins, Sian, Avery, Kerry N L, Gormley, Alexander, Radford, Phil, Elliott, Daisy, Byrne, Benjamin, Wilson, Nicholas, Hinchliffe, Robert, Blazeby, Jan

Journal:

Year:

2018

Language:

english

File:

PDF, 209 KB

english, 2018

10

Autism spectrum disorder: insights into convergent mechanisms from transcriptomics

Quesnel-Vallières, Mathieu, Weatheritt, Robert J., Cordes, Sabine P., Blencowe, Benjamin J.

Journal:

Nature Reviews Genetics

Year:

2018

Language:

english

File:

PDF, 2.28 MB

english, 2018

11

An activator of G protein-coupled receptor and MEK1/2-ERK1/2 signaling inhibits HIV-1 replication by altering viral RNA processing

Wong, Raymond W., Balachandran, Ahalya, Cheung, Peter K., Cheng, Ran, Pan, Qun, Stoilov, Peter, Harrigan, P. Richard, Blencowe, Benjamin J., Branch, Donald R., Cochrane, Alan, Campbell, Edward M.

Journal:

Year:

2020

Language:

english

File:

PDF, 7.34 MB

english, 2020

12

CDKN1C mutation in Wiedemann–Beckwith syndrome patients reduces RNA splicing efficiency and identifies a splicing enhancer

Jocelyne M. Lew, Yan Ling Fei, Kirk Aleck, Benjamin J. Blencowe, Rosanna Weksberg, Paul D. Sadowski

Journal:

American Journal of Medical Genetics Part A

Year:

2004

Language:

english

File:

PDF, 361 KB

english, 2004

13

Studying pre-mRNA splicing using antisense 2-OMe RNA oligonucleotides

Angus I. Lamond, Silvia Barabino, Benjamin J. Blencowe, Brian Sproat, Ursula Ryder

Journal:

Molecular Biology Reports

Year:

1990

Language:

english

File:

PDF, 97 KB

english, 1990

14

Molecular biology: RNA in control

Blencowe, Benjamin J., Khanna, May

Journal:

Year:

2007

Language:

english

File:

PDF, 330 KB

english, 2007

15

An RNA map predicting Nova-dependent splicing regulation

Ule, Jernej, Stefani, Giovanni, Mele, Aldo, Ruggiu, Matteo, Wang, Xuning, Taneri, Bahar, Gaasterland, Terry, Blencowe, Benjamin J., Darnell, Robert B.

Journal:

Year:

2006

Language:

english

File:

PDF, 1.05 MB

english, 2006

16

Deciphering the splicing code

Barash, Yoseph, Calarco, John A., Gao, Weijun, Pan, Qun, Wang, Xinchen, Shai, Ofer, Blencowe, Benjamin J., Frey, Brendan J.

Journal:

Year:

2010

Language:

english

File:

PDF, 567 KB

english, 2010

17

Rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteins

Ray, Debashish, Kazan, Hilal, Chan, Esther T, Castillo, Lourdes Peña, Chaudhry, Sidharth, Talukder, Shaheynoor, Blencowe, Benjamin J, Morris, Quaid, Hughes, Timothy R

Journal:

Nature Biotechnology

Year:

2009

Language:

english

File:

PDF, 384 KB

english, 2009

18

Addendum: Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing

Pan, Qun, Shai, Ofer, Lee, Leo J, Frey, Brendan J, Blencowe, Benjamin J

Journal:

Nature Genetics

Year:

2009

Language:

english

File:

PDF, 92 KB

english, 2009

19

Splicing on the brain

Blencowe, Benjamin J

Journal:

Nature Genetics

Year:

2005

Language:

english

File:

PDF, 274 KB

english, 2005

20

Using expression profiling data to identify human microRNA targets

Huang, Jim C, Babak, Tomas, Corson, Timothy W, Chua, Gordon, Khan, Sofia, Gallie, Brenda L, Hughes, Timothy R, Blencowe, Benjamin J, Frey, Brendan J, Morris, Quaid D

Journal:

Year:

2007

Language:

english

File:

PDF, 236 KB

english, 2007

21

When chromatin meets splicing

Kornblihtt, Alberto R, Schor, Ignacio E, Allo, Mariano, Blencowe, Benjamin J

Journal:

Nature Structural and Molecular Biology

Year:

2009

Language:

english

File:

PDF, 225 KB

english, 2009

22

The Nuclear-Retained Noncoding RNA MALAT1 Regulates Alternative Splicing by Modulating SR Splicing Factor Phosphorylation

Vidisha Tripathi, Jonathan D. Ellis, Zhen Shen, David Y. Song, Qun Pan, Andrew T. Watt, Susan M. Freier, C. Frank Bennett, Alok Sharma, Paula A. Bubulya, Benjamin J. Blencowe, Supriya G. Prasanth, Kan

Journal:

Year:

2010

Language:

english

File:

PDF, 2.21 MB

english, 2010

23

A Comparative Transcriptomic Analysis Reveals Conserved Features of Stem Cell Pluripotency in Planarians and Mammals

Roselyne M. Labbé, Manuel Irimia, Ko W. Currie, Alexander Lin, Shu Jun Zhu, David D.R. Brown, Eric J. Ross, Veronique Voisin, Gary D. Bader, Benjamin J. Blencowe, Bret J. Pearson

Journal:

Year:

2012

Language:

english

File:

PDF, 1.97 MB

english, 2012

24

Alternative splicing: decoding an expansive regulatory layer

Manuel Irimia, Benjamin J Blencowe

Journal:

Current Opinion in Cell Biology

Year:

2012

Language:

english

File:

PDF, 746 KB

english, 2012

25

Alternative splicing of conserved exons is frequently species-specific in human and mouse

Qun Pan, Malina A. Bakowski, Quaid Morris, Wen Zhang, Brendan J. Frey, Timothy R. Hughes, Benjamin J. Blencowe

Journal:

Trends in Genetics

Year:

2005

Language:

english

File:

PDF, 119 KB

english, 2005

26

Multiple interactions between SRm160 and SR family proteins in enhancer-dependent splicing and development of C. elegans

Dáša Longman, Tim McGarvey, Susan McCracken, Iain L. Johnstone, Benjamin J. Blencowe, Javier F. Cáceres

Journal:

Current Biology

Year:

2001

Language:

english

File:

PDF, 595 KB

english, 2001

27

Transcription: Surprising Role for an Elusive Small Nuclear RNA

Benjamin J. Blencowe

Journal:

Current Biology

Year:

2002

Language:

english

File:

PDF, 89 KB

english, 2002

28

Gene Expression: The Close Coupling of Transcription and Splicing

Emanuel Rosonina, Benjamin J Blencowe

Journal:

Current Biology

Year:

2002

Language:

english

File:

PDF, 91 KB

english, 2002

29

Splicing Regulation: The Cell Cycle Connection

Benjamin J. Blencowe

Journal:

Current Biology

Year:

2003

Language:

english

File:

PDF, 401 KB

english, 2003

30

The PWI motif: a new protein domain in splicing factors

Benjamin J Blencowe, Christos A Ouzounis

Journal:

Trends in Biochemical Sciences

Year:

1999

Language:

english

File:

PDF, 198 KB

english, 1999

31

A systematic search for new mammalian noncoding RNAs indicates little conserved intergenic transcription

Tomas Babak, Benjamin J Blencowe, Timothy R Hughes

Journal:

Year:

2005

Language:

english

File:

PDF, 919 KB

english, 2005

32

Alternative Splicing: New Insights from Global Analyses

Benjamin J. Blencowe

Journal:

Year:

2006

Language:

english

File:

PDF, 1013 KB

english, 2006

33

SnapShot: The Splicing Regulatory Machinery

Mathieu Gabut, Sidharth Chaudhry, Benjamin J. Blencowe

Journal:

Year:

2008

Language:

english

File:

PDF, 101 KB

english, 2008

34

Regulation of Vertebrate Nervous System Alternative Splicing and Development by an SR-Related Protein

John A. Calarco, Simone Superina, Dave O'Hanlon, Mathieu Gabut, Bushra Raj, Qun Pan, Ursula Skalska, Laura Clarke, Danielle Gelinas, Derek van der Kooy, Mei Zhen, Brian Ciruna, Benjamin J. Blencowe

Journal:

Year:

2009

Language:

english

File:

PDF, 1.92 MB

english, 2009

35

SnapShot: High-Throughput Sequencing Applications

Hong Han, Razvan Nutiu, Jason Moffat, Benjamin J. Blencowe

Journal:

Year:

2011

Language:

english

File:

PDF, 2.13 MB

english, 2011

36

Cross-Regulation between an Alternative Splicing Activator and a Transcription Repressor Controls Neurogenesis

Bushra Raj, Dave O'Hanlon, John P. Vessey, Qun Pan, Debashish Ray, Noel J. Buckley, Freda D. Miller, Benjamin J. Blencowe

Journal:

Year:

2011

Language:

english

File:

PDF, 808 KB

english, 2011

37

Tissue-Specific Alternative Splicing Remodels Protein-Protein Interaction Networks

Jonathan D. Ellis, Miriam Barrios-Rodiles, Recep Çolak, Manuel Irimia, TaeHyung Kim, John A. Calarco, Xinchen Wang, Qun Pan, Dave O'Hanlon, Philip M. Kim, Jeffrey L. Wrana, Benjamin J. Blencowe

Journal:

Year:

2012

Language:

english

File:

PDF, 913 KB

english, 2012

38

Identification and characterization of RED120: A conserved PWI domain protein with links to splicing and 3′-end formation

Puri Fortes, Dasa Longman, Susan McCracken, Joanna Y. Ip, Raymond Poot, Iain W. Mattaj, Javier F. Cáceres, Benjamin J. Blencowe

Journal:

Year:

2007

Language:

english

File:

PDF, 1.66 MB

english, 2007

39

Targeted snRNP depletion reveals an additional role for mammalian U1 snRNP in spliceosome assembly

Silvia M.L. Barabino, Benjamin J. Blencowe, Ursula Ryder, Brian S. Sproat, Angus I. Lamond

Journal:

Year:

1990

Language:

english

File:

PDF, 2.95 MB

english, 1990

40

Antisense probing of the human U4U6 snRNP with biotinylated 2′-OMe RNA oligonucleotides

Blencowe, Benjamin J., Sproat, Brian S., Ryder, Ursula, Barabino, Silvia, Lamond, Angus I.

Journal:

Year:

1989

Language:

english

File:

PDF, 2.69 MB

english, 1989

41

A Hyperphosphorylated Form of the Large Subunit of RNA Polymerase II is Associated with Splicing Complexes and the Nuclear Matrix

Michael J. Mortillaro, Benjamin J. Blencowe, Xiangyun Wei, Hiroshi Nakayasu, Lei Du, Stephen L. Warren, Phillip A. Sharp and Ronald Berezney

Journal:

Proceedings of the National Academy of Sciences

Year:

1996

Language:

english

File:

PDF, 1.29 MB

english, 1996

42

The SRm160/300 Splicing Coactivator Is Required for Exon-Enhancer Function

Adam G. Eldridge, Yu Li, Phillip A. Sharp and Benjamin J. Blencowe

Journal:

Proceedings of the National Academy of Sciences

Year:

1999

Language:

english

File:

PDF, 1.22 MB

english, 1999

43

Association of Nuclear Matrix Antigens with Exon-Containing Splicing Complexes

Benjamin J. Blencowe, Jeffrey A. Nickerson, Robbyn Issner, Sheldon Penman and Phillip A. Sharp

Journal:

The Journal of Cell Biology

Year:

1994

Language:

english

File:

PDF, 2.89 MB

english, 1994

44

The Acute Myeloid Leukemia-Associated Protein, DEK, Forms a Splicing-Dependent Interaction with Exon-Product Complexes

Tim McGarvey, Emanuel Rosonina, Susan McCracken, Qiyu Li, Ramy Arnaout, Edwin Mientjes, Jeffrey A. Nickerson, Don Awrey, Jack Greenblatt, Gerard Grosveld and Benjamin J. Blencowe

Journal:

The Journal of Cell Biology

Year:

2000

Language:

english

File:

PDF, 3.22 MB

english, 2000

45

Widespread intron retention in mammals functionally tunes transcriptomes

Braunschweig, Ulrich, Barbosa-Morais, Nuno L., Pan, Qun, Nachman, Emil N., Alipanahi, Babak, Gonatopoulos-Pournatzis, Thomas, Frey, Brendan, Irimia, Manuel, Blencowe, Benjamin J.

Journal:

Genome Research

Year:

2014

Language:

english

File:

PDF, 1.77 MB

english, 2014

46

Next-generation RNA Sequencing of Archival Formalin-fixed Paraffin-embedded Urothelial Bladder Cancer

Liu, Yu, Noon, Aidan P., Aguiar Cabeza, Eduardo, Shen, Jess, Kuk, Cynthia, Ilczynski, Christine, Ni, Ruoyu, Sukhu, Balram, Chan, Kin, Barbosa-Morais, Nuno L., Hermanns, Thomas, Blencowe, Benjamin J.,

Journal:

European Urology

Year:

2014

Language:

english

File:

PDF, 742 KB

english, 2014

47

Role of the SRm160/300 splicing coactivator in exon-enhancer function

Eldridge, Adam, Issner, Robbyn, Li, Yu, Reifenberg, Erica, Sharp, Phillip A, Blencowe, Benjamin J

Journal:

Biochemistry and Cell Biology

Year:

1999

Language:

english

File:

PDF, 234 KB

english, 1999

48

An exon-centric perspective 11 Canadian Society of Molecular Biosciences (CSMB) Senior Investigator Award

Blencowe, Benjamin J.

Journal:

Biochemistry and Cell Biology

Year:

2012

File:

PDF, 1.62 MB

2012

49

SR-related proteins and the processing of messenger RNA precursors

Blencowe, Benjamin J, Bowman, John AL, McCracken, Susan, Rosonina, Emanuel

Journal:

Biochemistry and Cell Biology

Year:

1999

File:

PDF, 3.13 MB

1999

50

Smg1 is required for embryogenesis and regulates diverse genes via alternative splicing coupled to nonsense-mediated mRNA decay

David R. McIlwain, Qun Pan, Patrick T. Reilly, Andrew J. Elia, Susan McCracken, Andrew C. Wakeham, Annick Itie-Youten, Benjamin J. Blencowe and Tak W. Mak

Journal:

Proceedings of the National Academy of Sciences

Year:

2010

Language:

english

File:

PDF, 1.23 MB

english, 2010